Mostly to echo what's already been said.
1) Ideally any bank of batteries (i.e. house bank) should be the same type, size, and age. Life isn't always ideal, but given the cost of batteries, and the annoyance (at least to me) of having potential degradation of function, I try very hard to adhere to this. Now, I might add a second battery of the same type/size/brand some few months after the first one, but probably not much past that. I just feel there are enough "mysterious variables" with battery chemistry that I want to eliminate that as a possible cause.
2) As far as jumper wire size, as mentioned above, you want to know how many amps (maximum possible) you will have going through those jumpers (charging or discharging), and the length (one way) of them. Then you can use a voltage drop calculator to see what you need. Keep in mind that if you are calculating voltage drop for something sensitive, such as the run from solar panels to solar controller, to batteries, and through jumpers, you have to add up all the legs. Since the jumper legs affect every circuit, I like to minimize voltage drop here. The two factors that "ding" you here are number of amps, and length of run(s).
The other thing you need to make sure is that you can fuse large enough. Say you are going to have a "jump start" link between start and house banks. And say your starter draws 150 amps (not counting inrush current). Then to me it would be nice to have wire that I could safely fuse to 200 amps. If not, I'd go up a size.
If you post some specifics, I'm sure folks here would be happy to double check your calcs (or just do them).
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