Sorry about that, thought you couldn't find the manual. I was reading it on my phone...
I never set up my BATT 2/starter battery.
Looking online, it looks like the smartgauge only monitors SOC on one bank, the main bank, and the start battery is only volts.
Per the manual:
"To revert to the Battery Voltage, press the VOLTS button. Pressing the BATT 2 button will show the voltage on Battery 2 if the Smartgauge has been wired to both house and starting batteries. The PGM/Batt 2 LED will be lit whenever voltage at the starting battery is being displayed.
To revert to the voltage or charge status of the house battery bank, press the VOLTS button or the STATUS button."
Looks like this confirms the SOC only on house battery bank. It does not appear you set the battery type for BATT 2/starter. Likely why it is not mentioned in the manual.
Are you getting volts for the starter battery?
I need to hook mine up. Originally I was leaving very shortly after and didn't have time. Just never was important enough to go back and do it.