May only complicate your situation more, but I had somewhat of a similar problem. Engine would cut out completely for a second or two, then regain itself. The aftermath each time was transmission started to do similar to what you have. Each time I stopped, turned off the engine and restarted everything would resume regular operation. The first couple times this happened with the trans I didn't even know the engine cut out, until I one time I observed my Scangauge rebooting.
Took about 4 visits to the Dealer, unfortunately they were never able to duplicate the problem, but i also never got any codes since the electrical system shut down for the seconds the issue developed. On the 4th visit they finally found the Engine wiring harness on the passenger side unraveled and one of the wires had been dangling intermittently against the exhaust manifold - over time it chaffed enough to make contact.
This may not be your exact issue, but I agree with carringb's earlier response, it could be a lot of different things associated with the engine wiring harness...unfortunately. I've also read that some of the Trans sensors can create similar issues when they go bad. I know how frustrating an electrical issue can be, so rooting they diagnose your problem quickly.
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TwoXentrix
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